Legacy publications funded by the Commonwealth Environment Research Facilities (CERF)
C1. Ahyong, S. T., Andreakis, N., and Taylor, J. (2011). Mitochondrial phylogeny of the deep-sea squat lobsters, Munidopsidae (Galatheoidea) . Zoologischer Anzeiger – A Journal of Comparative Zoology 250, 367–377. doi:10.1016/j.jcz.2011.06.005
C2. Ahyong, S. T., Baba, K., Macpherson, E., and Poore, G. C. B. (2010). A new classification of the Galatheoidea (Crustacea: Decapoda: Anomura). Zootaxa.
C3. Alderslade, P., Althaus, F., McEnnulty, F., Gowlett-Holmes, K., and Williams, A. (2014). Australia’s deep-water octocoral fauna: historical account and checklist, distributions and regional affinities of recent collections. Zootaxa 3796, 435. doi:10.11646/zootaxa.3796.310.11646/zootaxa.3796.3.2
C4. Alexander, T. J., Barrett, N. S., Haddon, M., and Edgar, G. J. (2009). Relationships between mobile macroinvertebrates and reef structure in a temperate marine reserve. Marine Ecology Progress Series 389, 31–44. doi:10.3354/meps08210
C5. Althaus, F., Williams, A., Schlacher, T. A., Kloser, R. J., Green, M. A., Barker, B. A., Bax, N. J., Brodie, P., and Hoenlinger-Schlacher, M. A. (2009). Impacts of bottom trawling on deep-coral ecosystems of seamounts are long-lasting. Marine Ecology Progress Series 397, 279–294. doi:10.3354/meps08248
C6. Anderson, T. J., McArthur, M. A., Syms, C., Nichol, S. L., and Brooke, B. P. (2013). Infaunal biodiversity and ecological function on a remote oceanic island: The role of biogeography and bio-physical surrogates. Estuarine, Coastal and Shelf Science 117, 227–237. doi:10.1016/j.ecss.2012.11.013
C7. Anderson, T. J., Nichol, S. L., Syms, C., Przeslawski, R., and Harris, P. T. (2011). Deep-sea bio-physical variables as surrogates for biological assemblages, an example from the Lord Howe Rise. Deep Sea Research Part II: Topical Studies in Oceanography 58, 979–991. doi:10.1016/j.dsr2.2010.10.053
C8. Andreakis, N., Gledhill, D., White, W., Puckridge, M., Bax, N., Van Oppen, M.J.H., Butler, A. J. & Last, P. R. (in revision). Origins and evolution of temperate Australian endemic fishes (wrasses, leatherjackets and stingarees) in light of historical climatic and geological factors. Molecular Ecology.
C9. Andris, M. et al. (2010). Di- and tri-nucleotide microsatellites in the deep sea squat 2 lobster Munida isos (Galatheidae). Molecular Ecology Resources 10, 1106–1108. doi:10.1111/men.2010.10.issue-610.1111/j.1755-0998.2010.02916.x
C10. Baker, E. K., and Harris, P. T. (2012). Habitat mapping and marine management. In Seafloor geomorphology as benthic habitat: GeoHAB atlas of seafloor geomorphic features and benthic habitats. Seafloor geomorphology as benthic habitat: GeoHAB atlas of seafloor geomorphic features and benthic habitats. pp. 22–38. Elsevier.
C11. Barrett, N. S., and Edgar, G. J. (2009). Distribution of benthic communities in the fjord-like Bathurst Channel ecosystem, south-western Tasmania, a globally anomalous estuarine protected area. Aquatic Conservation: Marine and Freshwater Ecosystems 20, 397–406. doi:10.1002/aqc.v20:410.1002/aqc.1085
C12. Barrett, N. S., Anderson, T. J., Brooke, B. P., Buchanan, C., McArthur, M. A., Atkinson, I., Nichol, S. L., Williams, S. B., Hulls, J., Edgar, G. J., Hill, N. A., Seiler, J., and Buxton, C. D. (2009). Quantitative biological baseline surveys of shelf rocky reef biota in Commonwealth MPAs off Tasmania.
C13. Barrett, N. S., Buxton, C. D., and Edgar, G. J. (2009). Changes in invertebrate and macroalgal populations within Tasmanian marine reserves in the decade following protection. Journal of Experimental Marine Biology and Ecology. doi: 10.1016/j.jembe.2008.12.005
C14. Bond, A. L., and Lavers, J. L. (2011). Trace Element Concentrations in Feathers of Flesh-footed Shearwaters (Puffinus carneipes) from Across Their Breeding Range. Archives of Environmental Contamination and Toxicology 61, 318–326. doi:10.1007/s00244-010-9605-3
C15. Boyd, C., Brooks, T. M., Butchart, S. H. M., Edgar, G. J., Da Fonseca, G. A. B., Hawkins, F., Hoffmann, M., Sechrest, W., Stuart, S. N., and Van Dijk, P. P. (2008). Spatial scale and the conservation of threatened species. Conservation Letters 1, 37–43. doi:10.1111/j.1755-263X.2008.00002.x
C16. Brooke, B. P., Creasey, J., and Sexton, M. (2010). Broad-scale geomorphology and benthic habitats of the Perth coastal plain and Rottnest Shelf, Western Australia, identified in a merged topographic and bathymetric digital relief model. International Journal of Remote Sensing 31, 6223–6237. doi:10.1080/01431160903403052
C17. Brooke, B. P., Harris, P. T., Nichol, S. L., Sexton, J., Arthur, W. C., Haese, R. R., Heap, A. D., Hazelwood, M. C., Radke, L. C., and Blewett, R. S. (2012). Living on the edge – waterfront views. In Shaping a nation: A geology of Australia. Shaping a nation: A geology of Australia. 2012. pp. 276–331. (Geoscience Australia and ANU E Press: Canberra.) Available at: http://epress.anu.edu.au/titles/shaping-a-nation
C18. Brooke, B. P., McArthur, M. A., Woodroffe, C. D., Linklater, M., Nichol, S. L., Anderson, T. J., Mleczko, R., and Sagar, S. (2011). Geomorphic features and infauna diversity of a subtropical mid-ocean carbonate shelf: Lord Howe Island, Southwest Pacific Ocean. In: Harris, P.T and Baker, E. (Eds). (Elsevier Insights.)
C19. Brooke, B. P., Woodroffe, C. D., Jones, B. G., Kennedy, D. M., and Buchanan, C. (2009). Brooke, B., Woodroffe, C., Jones, B., Kennedy, D., Buchanan, C. (2009). Morphology and age of the relict coral reef that surrounds Lord Howe Island.
C20. Brooke, B. P., Woodroffe, C. D., Linklater, M., McArthur, M. A., Nichol, S. L., Jones, B. G., Kennedy, D. M., Buchanan, C., Spinoccia, M., Mleczko, R., Cortese, A., I., A., and Sexton, M. (2010). Geomorphology of the Lord Howe Island shelf and submarine volcano. SS06-2008 Post-Survey Report. Geoscience Australia.
C21. Butler, A. J., Rees, T., Beesley, P., and Bax, N. J. (2010). Marine biodiversity in the Australian region. PLoS ONE. doi:10.1371/journal.pone.0011831
C22. Carpenter, K. E., Abrar, M., Aeby, G., Aronson, R. B., Banks, S., Bruckner, A., Chiriboga, A., Cortes, J., Delbeek, J. C., DeVantier, L., Edgar, G. J., Edwards, A. J., Fenner, D., Guzman, H. M., Hoeksema, B. W., Hodgson, G., Johan, O., Licuanan, W. Y., Livingstone, S. R., Lovell, E. R., Moore, J. A., Obura, D. O., Ochavillo, D., Polidoro, B. A., Precht, W. F., Quibilan, M. C., Reboton, C., Richards, Z. T., Rogers, A. D., Sanciangco, J., Sheppard, A., Sheppard, A., Smith, S. J., Stuart, S. N., Turak, E., Veron, J. E. N., Wallace, C., Weil, E., and Wood, E. (2008). One third of reef-building corals face elevated extinction risk from climate change and local impacts. Science 321, 560–563. doi:10.1126/science.1159196
C23. Clark, M. R., Althaus, F., Williams, A., Niklitschek, E., Menezes, G. M., Hareide, N.-R., Sutton, P., and O’Donnell, C. (2010). Are deep-sea demersal fish assemblages globally homogenous? Insights from seamounts. Marine Ecology 31, 39–51. doi:10.1111/j.1439-0485.2010.00384.x
C24. Clark, M. R., Rowden, A. A., Schlacher, T. A., Williams, A., Consalvey, M., Stocks, K. I., Rogers, A. D., O’Hara, T. D., White, M., Shank, T. M., and Hall-Spencer, J. M. (2010). The ecology of seamounts: structure, function, and human impacts. Annual Review of Marine Science 2, 253–278. doi:10.1146/annurev-marine-120308-081109
C25. Compton, T. J., Bowden, D. A., Pitcher, C. Roland, Hewitt, J. E., and Ellis, N. (2012). Biophysical patterns in benthic assemblage composition across contrasting continental margins off New Zealand. Journal of Biogeography. doi:10.1111/j.1365-2699.2012.02761.x
C26. Courtney, A. J., and Pitcher, C. R. (2009). Assessing the risk of incidental fishing mortality from trawling on Queensland sea snake populations. Fisheries Research and Development Corporation.
C27. Donlan, J. C., Wingfield, D. K., Crowder, L. B., and Wilcox, C. (2010). Assessing anthropogenic hazards to endangered species using expert opinion surveys: a case study with sea turtles. Conservation Biology.
C28. Dovers, E. (2009). Predicting the presence of sea snake species in the Great Barrier Reef. Appendix 4. CSIRO Sea snake maps. Pages 91–102. In: Courtney, A.J., Schemel, B.L, Wallace, R., Campbell, M.J., Mayer, D.G., Young, B. (2009). Reducing the impact of Queensland’s traw. Fisheries Research and Development Corporation.
C29. Dunstan, P. K., Althaus, F., Williams, A., and Bax, N. J., and Bograd, Steven J. (2012). Characterising and predicting benthic biodiversity for conservation planning in deepwater environments. PLoS ONE 7, e36558. doi:10.1371/journal.pone.0036558
C30. Dunstan, P. K., and Foster, S. D. (2011). RAD biodiversity: prediction of rank abundance distributions from deep water benthic assemblages. Ecography 34, 798–806. doi: 10.1111/j.1600-0587.2010.06552.x
C31. Dunstan, P. K., Bax, N. J., Foster, S. D., Williams, A., and Althaus, F. (2012). Identifying hotspots for biodiversity management using rank abundance distributions. Diversity and Distributions 18, 22–32. doi:10.1111/j.1472-4642.2011.00838.x
C32. Dunstan, P. K., Foster, S. D., and Darnell, R. (2011). Model based grouping of species across environmental gradients. Ecological Modelling 222, 955–963. doi:10.1016/j.ecolmodel.2010.11.030
C33. Edgar, G. J., and Stuart-Smith, R. D. (2009). Ecological effects of marine protected areas on rocky reef communities – a continental-scale analysis. Marine Ecology Progress Series 388, 51–62. doi:10.3354/meps08149
C34. Edgar, G. J., Barrett, N. S., and Stuart-Smith, R. D. (2009). Exploited reefs protected from fishing transform over decades into conservation features otherwise absent from seascapes. Ecological Applications 19, 1967–1974. doi:10.1890/09-0610.1
C35. Edgar, G. J., Davey, A., and Shepherd, C. (2010). Application of biotic and abiotic indicators for detecting benthic impacts of marine salmonid farming among coastal regions of Tasmania. Aquaculture 307, 212–218. doi:10.1016/j.aquaculture.2010.07.018
C36. Edgar, G. J., Langhammer, P. F., Allen, G., Brooks, T. M., Brodie, J., Crosse, W., De Silva, N., Fishpool, L. D. C., Foster, M. N., Knox, D. H., Mccosker, J. E., Mcmanus, R., Millar, A. J. K., and Mugo, R. (2008). Key biodiversity areas as globally significant target sites for the conservation of marine biological diversity. Aquatic Conservation: Marine and Freshwater Ecosystems 18, 969–983. doi:10.1002/aqc.v18:610.1002/aqc.902
C37. Ellis, N., Smith, S. J., and Pitcher, C. R. (2012). Gradient forests: calculating importance gradients on physical predictors. Ecology 93, 156–168. doi:10.1890/11-0252.1
C38. Fordham, D. A., Brook, B. W., Caley, M. Julian, Bradshaw, C. J. A., and Mellin, C. (2013). Conservation management and sustainable harvest quotas are sensitive to choice of climate modelling approach for two marine gastropods R. Keller. Diversity and Distributions. doi:10.1111/ddi.12092
C39. Foster, S. D. (2009). The analysis of biodiversity using rank abundance distributions. Biometrics. Available at: http://onlinelibrary.wiley.com/doi/10.1111/j.1541-0420.2009.01263.x/abstract
C40. Foster, S. D., Shimadzu, H., and Darnell, R. (2012). Uncertainty in spatially predicted covariates: is it ignorable?. Journal of the Royal Statistical Society: Series C (Applied Statistics). doi:10.1111/j.1467-9876.2011.01030.x
C41. Harris, P. T. (2012). Anthropogenic threats to benthic habitats. In Seafloor geomorphology as benthic habitat: GeoHAB atlas of seafloor geomorphic features and benthic habitats. pp. 39–60. Elsevier.
C42. Harris, P. T. (2012). Biogeography, benthic ecology and habitat classification schemes. In Seafloor geomorphology as benthic habitat: GeoHAB atlas of seafloor geomorphic features and benthic habitats. pp. 61–92. Elsevier.
C43. Harris, P. T. (2012). Seafloor geomorphology – coast, shelf and abyss. In Seafloor geomorphology as benthic habitat: GeoHAB atlas of seafloor geomorphic features and benthic habitats. pp. 109–156. Elsevier.
C44. Harris, P. T. (2012). Surrogacy. In Seafloor geomorphology as benthic habitat: GeoHAB atlas of seafloor geomorphic features and benthic habitats. pp. 93–108. Elsevier.
C45. Harris, P. T., and Baker, E. K. (2012). Synthesis and lessons learned. In Seafloor geomorphology as benthic habitat: GeoHAB atlas of seafloor geomorphic features and benthic habitats. pp. 869–890. Elsevier.
C46. Harris, P. T., and Baker, E. K. (2012). Why map benthic habitats. In Seafloor geomorphology as benthic habitat: GeoHAB atlas of seafloor geomorphic features and benthic habitats. pp. 1–22. Elsevier.
C47. Harris, P. T., and Hughes, M. G. (2012). Predicted benthic disturbance regimes on the Australian continental shelf: a modelling approach. Marine Ecology Progress Series 449, 13–25. doi:10.3354/meps09463
C48. Harris, P. T., and Whiteway, T. (2011). Global distribution of large submarine canyons: Geomorphic differences between active and passive continental margins. Marine Geology 285, 69–86. doi:10.1016/j.margeo.2011.05.008
C49. Harris, P. T., Nichol, S. L., Anderson, T. J., and Heap, A. D. (2012). Habitats and benthos of a deep sea marginal plateau, Lord Howe Rise, Australia. In Seafloor geomorphology as benthic habitat: GeoHAB atlas of seafloor geomorphic features and benthic habitats. pp. 777–790. Elsevier.
C50. Hawkins, S. J., Sugden, H. E., Mieszkowska, N., Moore, P. J., Poloczanska, E., Leaper, R., Herbert, R. J. H., Genner, M. J., Moschella, P. S., Thompson, R. C., Jenkins, S. R., Southward, A. J., and Burrows, M. T. (2009). Consequences of climate-driven biodiversity changes for ecosystem functioning of North European rocky shores. Marine Ecology Progress Series 396, 245–259. doi:10.3354/meps08378
C51. Heyward, A., Fromont, J., Schönberg, C. Hanna, Colquhoun, J., Radford, B., and Gomez, O. (2010). The Sponge Gardens of Ningaloo Reef, Western Australia. The Open Marine Biology Journal 4, 3–11. doi:10.2174/1874450801004010003
C52. Hill, N. A., Lucieer, V. L., Barrett, N. S., Anderson, T. J., and Williams, S. B. (2014). Filling the gaps: Predicting the distribution of temperate reef biota using high resolution biological and acoustic data. Estuarine, Coastal and Shelf Science 147, 137–147. doi:10.1016/j.ecss.2014.05.019
C53. Huang, Z., Brooke, B. P., and Li, J. (2011). Performance of predictive models in marine benthic environments based on predictions of sponge distribution on the Australian continental shelf. Ecological Informatics 6, 205–216. doi:10.1016/j.ecoinf.2011.01.001
C54. Huang, Z., Brooke, B., Whitta, N., Potter, A., Fuller, M., Dunn, J., and Pitcher, C. Roland (2010). Australian marine physical environmental data – descriptions and metadata. Geoscience Australia Record 2010/32. Geoscience Australia.
C55. Huang, Z., McArthur, M., Przeslawski, R., Siwabessy, P.J.W., Nichol, S., Anderson, T., and Brooke, B. (2014). Predictive mapping of soft bottom benthic biodiversity using a surrogacy approach, Marine and Freshwater Research, 65, 409–424.
C56. Huang, Z., McArthur, M. A., Radke, L. C., Anderson, T. J., Nichol, S. L., Siwabessy, J. P. W., and Brooke, B. (2012). Developing physical surrogates for benthic biodiversity using co-located samples and regression tree models: a conceptual synthesis for a sandy temperate embayment. International Journal of Geographical Information Science 26, 2141–2160. doi:10.1080/13658816.2012.658808
C57. Huang, Z., Siwabessy, J. P. W., Nichol, S. L., and Brooke, B. P. (2014). Predictive mapping of seabed substrata using high-resolution multibeam data. Marine Geology 357, 37–52. doi:10.1016/j.margeo.2014.07.012
C58. Huang, Z., Siwabessy, J. P. W., Nichol, S. L., Anderson, T. J., and Brooke, B. (2013). Predictive mapping of seabed cover types using angular response curves of multibeam backscatter data: Testing different feature analysis approaches. Continental Shelf Research 61–62, 12–22. doi:10.1016/j.csr.2013.04.024
C59. Hughes, M. G., Harris, P. T., and Brooke, B. P. (2010). Seabed exposure and ecological disturbance on Australia’s continental shelf: Potential surrogates for marine biodiversity Record 2010/43th ed. (Geoscience Australia.)
C60. Kloser, R. J., Penrose, J. D., and Butler, A. J. (2010). Multi-beam backscatter measurements used to infer seabed habitats. Continental Shelf Research 30, 1772–1782. doi:10.1016/j.csr.2010.08.004
C61. Last, P. R., and White, W. T. (2011). Biogeographic patterns in the Australian chondrichthyan fauna. Journal of Fish Biology 79, 1193–1213. doi:10.1111/jfb.2011.79.issue-510.1111/j.1095-8649.2011.03095.x
C62. Lavers, J. L., Wilcox, C., and Donlan, J. C. (2010). Bird demographic responses to predator removal programs. Biological Invasions 12, 3839–3859. doi:10.1007/s10530-010-9776-x
C63. Leaper, R., Dunstan, P. K., Foster, S. D., and Barrett, N. S. (2012). Comparing large-scale bioregions and fine-scale community-level biodiversity predictions from subtidal rocky reefs across south-eastern Australia. Journal of Applied Ecology. doi:10.1111/j.1365-2664.2012.02155.x
C64. Leaper, R., Hill, N. A., Edgar, G. J., Ellis, N., Lawrence, E., Pitcher, C. R., Barrett, N. S., and Thomson, R. J. (2011). Predictions of beta diversity for reef macroalgae across southeastern Australia. Ecosphere. doi: 10.1890/ES11-00089.1
C65. Lucieer, V. L., Barrett, N. S., Hill, N. A., and Nichol, S. L. (2010). Characterisation of shallow inshore coastal reefs on the Tasman Peninsula, South Eastern Tasmania, Australia. . In Seafloor geomorphology as benthic habitat: GeoHAB atlas of seafloor geomorphic features and benthic habitats. p. 936. Elsevier Insights.
C66. Lucieer, V. L., Hill, N. A., Barrett, N. S., and Nichol, S. L. (2013). Do marine substrates ‘look’ and ‘sound’ the same? Supervised classification of multibeam acoustic data using autonomous underwater vehicle images. Estuarine, Coastal and Shelf Science 117, 94–106. doi:10.1016/j.ecss.2012.11.001
C67. Lucieer, V. L., Pederson, H., Barrett, N. S., and Buxton, C. D. (2008). Assessing the robustness of a morphometric classification model to help predict Australia’s benthic marine habitat diversity. Available at: http://geohab.org/sitka.html
C68. McCallum, A. W., and Poore, G. C. B. (2013). Chirostylidae of Australia’s western continental margin (Crustacea : Decapoda : Anomura), with the description of five new species. Zootaxa 3664, 149. doi:10.11646/zootaxa.3664.210.11646/zootaxa.3664.2.3
C69. McCallum, A. W., Poore, G. C. B., Williams, A., Althaus, F., and O’Hara, T. D. (2013). Environmental predictors of decapod species richness and turnover along an extensive Australian continental margin (13–35°S). Marine Ecology. doi:10.1111/maec.12016
C70. McCallum, A. W., Woolley, S., Błażewicz-Paszkowycz, M., Browne, J., Gerken, S., Kloser, R., Poore, G. C. B., Staples, D., Syme, A., Taylor, J., Walker-Smith, G., Williams, A., and Wilson, R. S. (2014). Productivity enhances benthic species richness along an oligotrophic Indian Ocean continental margin. Global Ecology and Biogeography. doi:10.1111/geb.12255
C71. Mellin, C., Bradshaw, C. J. A., Meekan, M. G., and Caley, M. Julian (2010). Environmental and spatial predictors of species richness and abundance in coral reef fishes. Global Ecology and Biogeography 19, 212–222. doi:10.1111/j.1466-8238.2009.00513.x
C72. Mellin, C., Delean, S., Caley, M. Julian, Edgar, G. J., Meekan, M. G., Pitcher, C. Roland, Przeslawski, R., Williams, A., and Bradshaw, C. J. A. (2011). Results of expert survey on the effectiveness of biological surrogates IN Effectiveness of Biological Surrogates for Predicting Patterns of Marine Biodiversity: A Global Meta-Analysis J. A. Gilbert. PLoS ONE 6, e20141. doi:10.1371/journal.pone.00201411
C73. Mellin, C., Delean, S., Caley, M. Julian, Edgar, G. J., Meekan, M. G., Pitcher, C. Roland, Przeslawski, R., Williams, A., and Bradshaw, C. J. A. (2011). Effectiveness of biological surrogates for predicting patterns of marine biodiversity: a global meta-analysis J. A. Gilbert. PLoS ONE 6, e20141. doi:10.1371/journal.pone.0020141
C74. Mellin, C., Huchery, C., Caley, M. Julian, Meekan, M. G., and Bradshaw, C. J. A. (2010). Reef size and isolation determine the temporal stability of coral reef fish populations. Ecology 91, 3138–3145. doi:10.1890/10-0267.1
C75. Mellin, C., Mouillot, D., Kulbicki, M., McClanahan, T. R., Vigliola, L., Bradshaw, C. J. A., Brainard, R. E., Chabanet, P., Edgar, G. J., Fordham, D. A., Friedlander, A. M., Parravicini, V., Sequeira, A. M. M., Stuart-Smith, R. D., Wantiez, L., and Caley, M. J. (in revision). Humans and climate variability threaten large-bodied, small-ranging fishes on coral reefs. Nature Communications.
C76. Mellin, C., Parrott, L., Andréfouët, S., Bradshaw, C. J. A., MacNeil, A. M., and Caley, M. Julian (2012). Multi-scale marine biodiversity patterns inferred efficiently from habitat image processing. Ecological Applications 22, 792–803. doi:10.1890/11-2105.1
C77. Menot, L., Sibuet, M., Carney, R. S., Levin, L. A., Rowe, G. T., Billett, D. S. M., Poore, G. C. B., Kitazato, H., Vanreusel, A., Galéron, J., Lavrado, H. P., Sellanes, J., Ingole, B., and Krylova, E. M. (2010). New perceptions of continental margin biodiversity. In: McIntyre, A.D. (Ed.) Life in the world’s oceans: diversity, distribution, and abundance. Wiley-Blackwell, Oxford.
C78. Miller, K. J., Williams, A., Rowden, A. A., Knowles, C., and Dunshea, G. (2010). Conflicting estimates of connectivity among deep-sea coral populations. Marine Ecology 31, 144–157. doi:10.1111/j.1439-0485.2010.00380.x
C79. Mleczko, R., Sagar, S., Spinoccia, M., and Brooke, B. P. (2010). The creation of high resolution bathymetry grids for the Lord Howe Island region. Geoscience Australia.
C80. Nichol, S. L., and Brooke, B. P. (2011). Shelf habitat distribution as a legacy of Late Quaternary marine transgressions: a case study from a tropical carbonate province. Continental Shelf Research 31, 1845–1857. doi:10.1016/j.csr.2011.08.009
C81. Nichol, S. L., Anderson, T. J., Battershill, C., and Brooke, B. P. (2011). Submerged reefs and aeolian dunes as inherited habitats, Point Cloates, Carnarvon Shelf, Western Australia. In: GeoHab Atlas of Seafloor Geomorphology Features and Benthic Habitats. In GeoHab Atlas of Seafloor Geomorphology Features and Benthic Habitats. GeoHab Atlas of Seafloor Geomorphology Features and Benthic Habitats. Elsevier Insights.
C82. O’Hara, T. D., Rowden, A. A., and Bax, N. J. (2011). A Southern Hemisphere bathyal fauna is distributed in latitudinal bands. Current Biology 21, 226–230. doi:10.1016/j.cub.2011.01.002
C83. Pascoe, S., Wilcox, C., and Donlan, J. C. (2011). Biodiversity offsets: a cost-effective interim solution to seabird bycatch in fisheries?. PLoS ONE 6. doi: 10.1371/journal.pone.0025762
C84. Pitcher, C. R. (2011). Analysis of relationships between seabed species/assemblages and their physical environment using Random Forests statistical methods. In ICES CM 2011/G:06. (N. Ellis.) ICES CM 2011/G:06.
C85. Pitcher, C. R., Doherty, P. J., and Anderson, T. J. (2008). Seabed environments, habitats and biological assemblages. pp 51–58. In: Hutchings, P.A., M.J. Kingsford, and O. Hoegh-Guldberg (Eds.). The Great Barrier Reef: Biological, Environment and Management. CSIRO Publishing.
C86. Pitcher, C. R., Lawton, P., Ellis, N., Smith, S. J., Lewis, I. S., Wei, C.-L., Greenlaw, M. E., Wolff, N. H., Sameoto, J. A., and Snelgrove, P. V. R. (2012). Exploring the role of environmental variables in shaping patterns of seabed biodiversity composition in regional-scale ecosystems. Journal of Applied Ecology 49, 670–679. doi:10.1111/j.1365-2664.2012.02148.x
C87. Poore, G. C. B., and Andreakis, N. (2011). Morphological, molecular and biogeographic evidence support two new species in the Uroptychus naso complex (Crustacea: Decapoda: Chirostylidae). Molecular Phylogenetics and Evolution 60, 152–169. doi:10.1016/j.ympev.2011.03.032
C88. Poore, G. C. B., McCallum, A. W., and Taylor, J. (2008). Decapod Crustacea of the continental margin of southwestern and central Western Australia: preliminary identifications of 524 species from FRV Southern Surveyor voyage SS10-2005. Museum Victoria Science Reports.
C89. Porter-Smith, R., Lyne, V. D., Kloser, R. J., and Lucieer, V. L. (2012). Catchment-based classification of Australia’s continental slope canyons. Marine Geology 303–306, 183–192. doi:10.1016/j.margeo.2012.01.008
C90. Przeslawski, R., Currie, D. R., Sorokin, S. J., Ward, T. M., Althaus, F., and Williams, A. (2011). Utility of a spatial habitat classification system as a surrogate of marine benthic community structure for the Australian margin. ICES Journal of Marine Science 68, 1954–1962. doi:10.1093/icesjms/fsr106
C91. Przeslawski, R., McArthur, M. A., and Anderson, T. J. (2013). Infaunal biodiversity patterns from Carnarvon Shelf (Ningaloo Reef), Western Australia. Marine and Freshwater Research 64, 573. doi:10.1071/MF12240
C92. Puckridge, M., Andreakis, N., Appleyard, S. A., and Ward, R. D. (2012). Cryptic diversity in flathead fishes (Scorpaeniformes: Platycephalidae) across the Indo-West Pacific uncovered by DNA barcoding. Molecular Ecology Resources 13, 32–42. doi:10.1111/men.2012.13.issue-110.1111/1755-0998.12022
C93. Puckridge, M., Last, P. R., and Andreakis, N. (2015). The role of peripheral endemism and habitat associations in the evolution of the Indo-West Pacific tuskfishes (Labridae: Choerodon). Molecular Phylogenetics and Evolution 84, 64–72. doi:10.1016/j.ympev.2014.11.007
C94. Puckridge, M., Last, P. R., White, W. T., and Andreakis, N. (2012). Phylogeography of the Indo-West Pacific maskrays (Dasyatidae, Neotrygon): a complex example of chondrichthyan radiation in the Cenozoic. Ecology and Evolution. doi:10.1002/ece3.448
C95. Puckridge, M., Last, P.R., Gledhill, D. & Andreakis, N. (in revision). Contrasting patterns of latitudinal diversity gradients in the Indo-West Pacific: Phylogeography of the flathead fishes (Platycephalidae). Journal of Biogeography.
C96. Radke, L. C., Heap, A. D., Douglas, G., Nichol, S. L., Trafford, J., Li, J., and Przeslawski, R. (2011). A geochemical characterization of deep-sea floor sediments of the northern Lord Howe Rise. Deep Sea Research Part II: Topical Studies in Oceanography 58, 909–921. doi:10.1016/j.dsr2.2010.10.047
C97. Radke, L. C., Huang, Z., Przeslawski, R., Webster, I. T., McArthur, M. A., Anderson, T. J., Siwabessy, J. P. W., and Brooke, B. P. (2011). Including biogeochemical factors and a temporal component in benthic habitat maps: influences on infaunal diversity in a temperate embayment. Marine and Freshwater Research 62, 1432. doi:10.1071/MF11110
C98. Richer de Forges, B., and Poore, G. C. B. (2008). Deep-sea majoid crabs of the genera Oxypleurodon and Rochinia (Crustacea: Decapoda: Brachyura: Epialtidae) mostly from the continental margin of Western Australia. Memoirs of Museum Victoria.
C99. Rowden, A. A., Schlacher, T. A., Williams, A., Clark, M. R., Stewart, R., Althaus, F., Bowden, D. A., Consalvey, M., Robinson, W., and Dowdney, J. (2010). A test of the seamount oasis hypothesis: Seamounts support higher epibenthic megafaunal biomass than adjacent slopes. Marine Ecology 31, 95–106. doi:10.1111/j.1439-0485.2010.00369.x
C100. Russell, B. D., Connell, S. D., Mellin, C., Brook, B. W., Burnell, O. W., and Fordham, D. A. (2012). Predicting the distribution of commercially important invertebrate stocks under future climate K. Patraw Van Niel. PLoS ONE 7, e46554. doi: 10.1371/journal.pone.0046554
C101. Schmidt-Roach, S., Lundgren, P., Miller, K. J., Gerlach, G., Noreen, A. M. E., and Andreakis, N. (2013). Assessing hidden species diversity in the coral Pocillopora damicornis from Eastern Australia. Coral Reefs 32, 161–172. doi:10.1007/s00338-012-0959-z
C102. Schmidt-Roach, S., Miller, K. J., and Andreakis, N. (2013). Pocillopora aliciae : a new species of scleractinian coral (Scleractinia, Pocilloporidae) from subtropical Eastern Australia. Zootaxa 3626, 576–582. doi:10.11646/zootaxa.3626.4.11
C103. Schmidt-Roach, S., Miller, K. J., Lundgren, P., and Andreakis, N. (2014). With eyes wide open: a revision of species within and closely related to the Pocillopora damicornis species complex (Scleractinia; Pocilloporidae) using morphology and genetics. Zoological Journal of the Linnean Society 170, 1–33. doi:10.1111/zoj.12092
C104. Schmidt-Roach, S., Miller, K. J., Woolsey, E., Gerlach, G., and Baird, A. H. (2012). Broadcast spawning by Pocillopora Species on the Great Barrier Reef T. Harder. PLoS ONE 7, e50847. doi:10.1371/journal.pone.0050847
C105. Seiler, J., Friedman, A., Steinberg, D., Barrett, N. S., Williams, A., and Holbrook, N. J. (2012). Image-based continental shelf habitat mapping using novel automated data extraction techniques. Continental Shelf Research 45, 87–97. doi:10.1016/j.csr.2012.06.003
C106. Seiler, J., Williams, A., and Barrett, N. S. (2012). Assessing size, abundance and habitat preferences of the Ocean Perch Helicolenus percoides using a AUV-borne stereo camera system. Fisheries Research 129–130, 64–72. doi:10.1016/j.fishres.2012.06.011
C107. Siwabessy, J. P. W., Daniell, J., and Heap, A. D. (2009). Seabed habitat mapping the Capel/Faust Plateau on the Lord Howe Rise using multibeam backscatter data from SIMRAD EM300 sonar System.
C108. Steele, K., Carmel, Y., Cross, J., and Wilcox, C. (2009). Uses and misuses of multi-criteria decision analysis (MCDA) in environmental decision-making. Risk Analysis. doi:10.1111/j.1539-6924.2008.01130.x/abstract
C109. Sutcliffe P. R., Pitcher, C. R., Caley, M. J., and Possingham H. P. (2012). Biological surrogacy in tropical seabed assemblages fails. Ecological Applications. doi:10.1890/11-0990.1
C110. Sutcliffe, P. R., Mellin, C., Pitcher, C. R., Possingham, H. P., and Caley, M. J. (2014). Regional-scale patterns and predictors of species richness and abundance across twelve major tropical inter-reef taxa. Ecography 37, 162–171. doi:10.1111/j.1600-0587.2013.00102.x
C111. Thomson, R. J., Hill, N. A., Leaper, R., Ellis, N., Pitcher, C. R., Barrett, N. S., and Edgar, G. J. (2013). Congruence in demersal fish, macro invertebrate and macroalgal community turnover on shallow temperate reefs. Ecological Applications, 130717092154007. doi:10.1890/12-1549.1
C112. Wilcox, C., and Donlan, J. C. (2007). Compensatory mitigation as a solution to fisheries bycatch – biodiversity conservation conflicts. Frontiers in Ecology and the Environment 5, 325–331. doi:10.1890/1540-9295(2007)5[325:CMAAST]2.0.CO;2
C113. Wilcox, C., and Donlan, J. C. (2009). Need for a clear and fair evaluation of biodiversity offsets for fisheries bycatch. Conservation Biology 23, 770–772. doi:10.1111/cbi.2009.23.issue-310.1111/j.1523-1739.2009.01173.x
C114. Williams, A., Althaus, F., Clark, M. R., and Gowlett-Holmes, K. (2011). Composition and distribution of deep-sea benthic invertebrate megafauna on the Lord Howe Rise and Norfolk Ridge, southwest Pacific Ocean. Deep Sea Research Part II: Topical Studies in Oceanography 58, 948–958. doi:10.1016/j.dsr2.2010.10.050
C115. Williams, A., Althaus, F., Dunstan, P. K., Poore, G. C. B., Bax, N. J., Kloser, R. J., and McEnnulty, F. R. (2010). Scales of habitat heterogeneity and megabenthos biodiversity on an extensive Australian continental margin (100–1,000m depths). Marine Ecology. Available at: http://www3.interscience.wiley.com/journal/123264322/abstract
C116. Williams, A., Schlacher, T. A., Rowden, A. A., Althaus, F., Clark, M. R., Bowden, D. A., Stewart, R., Bax, N. J., Consalvey, M., and Kloser, R. J. (2010). Seamount megabenthic assemblages fail to recover from trawling impacts. Marine Ecology 31, 183–199. doi:10.1111/j.1439-0485.2010.00385.x
C117. Williams, S. B., Pizarro, O., Jakuba, M., and Barrett, N. S. (2010). AUV benthic habitat mapping in South Eastern Tasmania B. Siciliano, Khatib, O., Groen, F., Howard, A., Iagnemma, K., and Kelly, A. (Springer Berlin Heidelberg: Berlin, Heidelberg.) doi:10.1007/978-3-642-13408-110.1007/978-3-642-13408-1_25
C118. Williams, S. B., Pizarro, O., Jakuba, M., Johnson, C., Barrett, N. S., Babcock, R., Kendrick, G., Steinberg, P., Heyward, A., Doherty, P. J., Mahon, I., Johnson-Roberson, M., Steinberg, D., and Friedman, A. (2012). Monitoring of benthic reference sites. IEEE Robotics & Automation Magazine 19, 73–84. doi:10.1109/MRA.2011.2181772